ce53dcd0bbccd37b7b8a408338600aece2182496,src/test/java/com/milaboratory/mixcr/cli/JsonOverriderTest.java,JsonOverriderTest,testArray1,#,90
Before Change
new VJCClonalAlignerParameters(GeneFeature.VRegion, 0.3f,
new BandedAlignerParameters(LinearGapAlignmentScoring.getNucleotideBLASTScoring(), 3, -50)),
new VJCClonalAlignerParameters(GeneFeature.JRegion, 0.4f,
new BandedAlignerParameters(LinearGapAlignmentScoring.getNucleotideBLASTScoring(), 5, -40)),
null, new DAlignerParameters(GeneFeature.DRegion, 30.0f, 0.85f, 3, AffineGapAlignmentScoring.getNucleotideBLASTScoring())
);
After Change
new VJCClonalAlignerParameters(0.3f,
LinearGapAlignmentScoring.getNucleotideBLASTScoring(), 3),
new VJCClonalAlignerParameters(0.4f,
LinearGapAlignmentScoring.getNucleotideBLASTScoring(), 5),
null, new DClonalAlignerParameters(0.85f, 30.0f, 3, AffineGapAlignmentScoring.getNucleotideBLASTScoring())
);