11f33d098196463b93fa6262e69d38aae201c669,src/test/java/org/seqdoop/hadoop_bam/TestBAMInputFormat.java,TestBAMInputFormat,completeSetup,#boolean#List#,106

Before Change


    if (intervals != null) {
      BAMInputFormat.setIntervals(conf, intervals);
    }
    taskAttemptContext = ContextUtil.newTaskAttemptContext(conf, mock(TaskAttemptID.class));
    jobContext = ContextUtil.newJobContext(conf, taskAttemptContext.getJobID());
  }

  @Test

After Change


  }

  private void completeSetup(boolean keepPairedReadsTogether, List<Interval> intervals) {
    Configuration conf = new Configuration();
    conf.set("mapred.input.dir", "file://" + input);
    conf.setBoolean(BAMInputFormat.KEEP_PAIRED_READS_TOGETHER_PROPERTY,
        keepPairedReadsTogether);
    if (intervals != null) {
      BAMInputFormat.setIntervals(conf, intervals);
    }
    taskAttemptContext = new TaskAttemptContextImpl(conf, mock(TaskAttemptID.class));
    jobContext = new JobContextImpl(conf, taskAttemptContext.getJobID());
  }

  @Test