60569f1f6d4041b6bd32af4cb2a905b0926c9135,src/test/java/org/pharmgkb/pharmcat/reporter/ReporterTest.java,ReporterTest,reporterTest,#,25

Before Change


    Path callerFile     = TestUtil.getFile("org/pharmgkb/pharmcat/reporter/test.haplotyper.output.json");
    Path outputFile     = callerFile.getParent().resolve("test.haplotyper.output.md");

    Reporter reporter = new Reporter(
        m_annotationsDir.toFile(),
        callerFile.toFile(),
        outputFile);
    reporter.run();
  }

  @Test

After Change


    Path callerFile     = TestUtil.getFile("org/pharmgkb/pharmcat/reporter/test.haplotyper.output.json");
    Path outputFile     = callerFile.getParent().resolve("test.haplotyper.output.md");

    s_reporter.analyze(callerFile.toFile()).printMarkdown(outputFile);
  }

  @Test