3b15cb8269b0d8375d98db031cf30ea490acc0d3,src/main/java/eu/isas/peptideshaker/gui/tabpanels/OverviewPanel.java,OverviewPanel,updateSpectrum,#number#boolean#,4695
Before Change
spectrumPanel.setYAxisZoomExcludesBackgroundPeaks(annotationPreferences.yAxisZoomExcludesBackgroundPeaks());
int forwardIon = peptideShakerGUI.getIdentificationParameters().getSearchParameters().getIonSearched1();
int rewindIon = peptideShakerGUI.getIdentificationParameters().getSearchParameters().getIonSearched2();
// add de novo sequencing
spectrumPanel.addAutomaticDeNovoSequencing(currentPeptide, annotations,
After Change
spectrumPanel.setYAxisZoomExcludesBackgroundPeaks(annotationPreferences.yAxisZoomExcludesBackgroundPeaks());
Integer forwardIon = peptideShakerGUI.getIdentificationParameters().getSearchParameters().getForwardIons().get(0);
Integer rewindIon = peptideShakerGUI.getIdentificationParameters().getSearchParameters().getRewindIons().get(0);
// add de novo sequencing
spectrumPanel.addAutomaticDeNovoSequencing(currentPeptide, annotations,