fa52c21ebe27674a9ac57d5e693af9ea4614905b,src/main/java/uk/ac/ebi/pride/utilities/data/exporters/MzIdentMLMzTabConverter.java,MzIdentMLMzTabConverter,loadPSMs,#uk.ac.ebi.pride.utilities.data.core.Protein#List#,567

Before Change


                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_CHROM_COLUMN, "null");
                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_CHROMSTART_COLUMN, "null");
                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_CHROMEND_COLUMN, "null");
                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_STRAND_COLUMN, "null");
                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_PSM_FDRSCORE_COLUMN, "null");
                for (UserParam userParam : oldPSM.getPeptideEvidence().getUserParams()) {
                    switch (userParam.getName()) {

After Change


                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_CHROM_COLUMN, "null");
                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_CHROMSTARTS_COLUMN, "null");
                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_CHROMENDS_COLUMN, "null");
                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_STRAND_COLUMN, "null");
                psm.setOptionColumnValue(MzTabUtils.OPTIONAL_PSM_FDRSCORE_COLUMN, "null");
                Set<String> starts = new HashSet<>();
                Set<String> ends = new HashSet<>();