1fa7028480433ec5f94cb1bf89695c3e8ea7e30d,GeneticRiskScoreCalculator/src/main/java/nl/systemsgenetics/simplegeneticriskscorecalculator/CalculateSimpleGeneticRiskScore.java,CalculateSimpleGeneticRiskScore,calculate,#RandomAccessGenotypeData#THashMap#File#number#number#boolean#number[]#,33

Before Change


                                                    continue;
                                                }
                                                try {
                                                    Ld ld = var1.calculateLd(var2);
                                                    if (ld.getR2() >= rSquare) {
                                                        excludeSNPs[t] = true;
                                                        excludeList.add(riskE2.getRsName());
                                                    }

After Change


                                                    excludeList.add(riskE2.getRsName());
                                                    continue;
                                                }
                                                if (calculateFastLd(var1, var2) >= rSquare) {
                                                    excludeSNPs[t] = true;
                                                    excludeList.add(riskE2.getRsName());
                                                }