26bf7349941b0a40e5fd02d1efb08600a9ea2b4f,src/main/java/de/mpc/pia/modeller/PSMModeller.java,PSMModeller,createCombinedSpectrumIdentification,#AnalysisSoftware#List#,3324
Before Change
combiningProtocol.getAdditionalSearchParams().getCvParam().add(
tempCvParam);
tempCvParam = new CvParam();
tempCvParam.setAccession(PIAConstants.CV_PIA_COMBINED_FDRSCORE_CALCULATED_ACCESSION);
tempCvParam.setCv(MzIdentMLTools.getCvPSIMS());
tempCvParam.setName(PIAConstants.CV_PIA_COMBINED_FDRSCORE_CALCULATED_NAME);
tempCvParam.setValue(Boolean.toString(isCombinedFDRScoreCalculated()));
combiningProtocol.getAdditionalSearchParams().getCvParam().add(tempCvParam);
if (isCombinedFDRScoreCalculated()) {
After Change
combiningProtocol.getAdditionalSearchParams().getCvParam().add(
tempCvParam);
tempCvParam = MzIdentMLTools.createPSICvParam(
OntologyConstants.PIA_COMBINED_FDRSCORE_CALCULATED,
Boolean.toString(isCombinedFDRScoreCalculated()));
combiningProtocol.getAdditionalSearchParams().getCvParam().add(tempCvParam);
if (isCombinedFDRScoreCalculated()) {