26bf7349941b0a40e5fd02d1efb08600a9ea2b4f,src/main/java/de/mpc/pia/modeller/PSMModeller.java,PSMModeller,createCombinedSpectrumIdentification,#AnalysisSoftware#List#,3324

Before Change


        combiningProtocol.getAdditionalSearchParams().getCvParam().add(
                tempCvParam);

        tempCvParam = new CvParam();
        tempCvParam.setAccession(PIAConstants.CV_PIA_COMBINED_FDRSCORE_CALCULATED_ACCESSION);
        tempCvParam.setCv(MzIdentMLTools.getCvPSIMS());
        tempCvParam.setName(PIAConstants.CV_PIA_COMBINED_FDRSCORE_CALCULATED_NAME);
        tempCvParam.setValue(Boolean.toString(isCombinedFDRScoreCalculated()));
        combiningProtocol.getAdditionalSearchParams().getCvParam().add(tempCvParam);

        if (isCombinedFDRScoreCalculated()) {

After Change


        combiningProtocol.getAdditionalSearchParams().getCvParam().add(
                tempCvParam);

        tempCvParam = MzIdentMLTools.createPSICvParam(
                OntologyConstants.PIA_COMBINED_FDRSCORE_CALCULATED,
                Boolean.toString(isCombinedFDRScoreCalculated()));
        combiningProtocol.getAdditionalSearchParams().getCvParam().add(tempCvParam);

        if (isCombinedFDRScoreCalculated()) {