55205054dae9b3a99e17626ddcf9519206d7a6b7,src/main/java/uk/ac/ebi/pride/utilities/data/exporters/MzIdentMLMzTabConverter.java,MzIdentMLMzTabConverter,loadPSMs,#uk.ac.ebi.pride.utilities.data.core.Protein#List#,551

Before Change


            PSM psm = new PSM(psmColumnFactory, metadata);
            psm.setSequence(oldPSM.getPeptideSequence().getSequence());
            psm.setPSM_ID(oldPSM.getSpectrumIdentification().getId().toString());
            psm.setAccession(generateAccession(oldPSM));

            ParamGroup nameDatabase = oldPSM.getPeptideEvidence().getDbSequence().getSearchDataBase().getNameDatabase();
            psm.setDatabase(getDatabaseName(nameDatabase.getCvParams(), nameDatabase.getUserParams()));

After Change


            PSM psm = new PSM(psmColumnFactory, metadata);
            psm.setSequence(oldPSM.getPeptideSequence().getSequence());
            psm.setPSM_ID(oldPSM.getSpectrumIdentification().getId().toString());
            psm.setAccession(removeNewLineAndTab(generateAccession(oldPSM)));

            ParamGroup nameDatabase = oldPSM.getPeptideEvidence().getDbSequence().getSearchDataBase().getNameDatabase();
            psm.setDatabase(getDatabaseName(nameDatabase.getCvParams(), nameDatabase.getUserParams()));