23b6b91b3de5b1f73c2e84c41c181700517364e6,src/gov/nih/ncgc/bard/capextract/handler/ExperimentResultsHandler.java,ExperimentResultsHandler,process,#String#CapResource#,34
Before Change
//process expt results
handler.process(href, CAPConstants.CapResource.RESULT_JSON);
//set complete status
setExtractionStatus(CAPConstants.CAP_STATUS_COMPLETE, href,
CAPConstants.CapResource.EXPERIMENT);
}
}
}
After Change
* @param resource CAPResource for experiments.
*/
public int process(String url, CapResource resource) throws IOException {
if (resource != CAPConstants.CapResource.EXPERIMENTS) return CAPConstants.CAP_EXTRACT_LOAD_STATUS_FAILED;
log.info("Processing " + resource);
while (url != null) { // in case 206 partial response is returned, we should continue to iterate
// get the Experiments object here
Experiments experiments = getResponse(url, resource);
url = null;
BigInteger n = experiments.getCount();
log.info("Will be processing " + n + " experiments result");
List<Link> links = experiments.getLink();
for (Link link : links) {
if (link.getRel().equals("next")) {
url = link.getHref();
log.info("have next link, not related");
} else if (link.getRel().equals("related") &&
link.getType().equals(CAPConstants.CapResource.EXPERIMENT.getMimeType())) {
log.info("have related link, process results");
String href = link.getHref();
link.getType();
link.getTitle();
//log.info("\t" + title + "/" + type + "/ href = " + href);
int loadStatus;
ICapResourceHandler handler = CapResourceHandlerRegistry.getInstance().getHandler(CAPConstants.CapResource.RESULT_JSON);
if (handler != null) {
//set start status
setExtractionStatus(CAPConstants.CAP_STATUS_STARTED, href,
CAPConstants.CapResource.EXPERIMENT);
//process expt results
loadStatus = handler.process(href, CAPConstants.CapResource.RESULT_JSON);
//set complete status
if(loadStatus == CAPConstants.CAP_EXTRACT_LOAD_STATUS_COMPLETE) {
setExtractionStatus(CAPConstants.CAP_STATUS_COMPLETE, href,
CAPConstants.CapResource.EXPERIMENT);
} else if(loadStatus == CAPConstants.CAP_EXTRACT_LOAD_STATUS_FAILED) {
setExtractionStatus(CAPConstants.CAP_STATUS_FAILED, href,
CAPConstants.CapResource.EXPERIMENT);
}
}
}
}
}
return CAPConstants.CAP_EXTRACT_LOAD_STATUS_COMPLETE;
}
/*