1fa7028480433ec5f94cb1bf89695c3e8ea7e30d,GeneticRiskScoreCalculator/src/main/java/nl/systemsgenetics/simplegeneticriskscorecalculator/CalculateSimpleGeneticRiskScore.java,CalculateSimpleGeneticRiskScore,calculate,#RandomAccessGenotypeData#THashMap#File#number#number#boolean#number[]#,33
Before Change
continue;
}
try {
Ld ld = var1.calculateLd(var2);
if (ld.getR2() >= rSquare) {
excludeSNPs[t] = true;
excludeList.add(riskE2.getRsName());
}
After Change
excludeList.add(riskE2.getRsName());
continue;
}
if (calculateFastLd(var1, var2) >= rSquare) {
excludeSNPs[t] = true;
excludeList.add(riskE2.getRsName());
}