11f33d098196463b93fa6262e69d38aae201c669,src/test/java/org/seqdoop/hadoop_bam/TestBAMInputFormat.java,TestBAMInputFormat,completeSetup,#boolean#List#,106
Before Change
if (intervals != null) {
BAMInputFormat.setIntervals(conf, intervals);
}
taskAttemptContext = ContextUtil.newTaskAttemptContext(conf, mock(TaskAttemptID.class));
jobContext = ContextUtil.newJobContext(conf, taskAttemptContext.getJobID());
}
@Test
After Change
}
private void completeSetup(boolean keepPairedReadsTogether, List<Interval> intervals) {
Configuration conf = new Configuration();
conf.set("mapred.input.dir", "file://" + input);
conf.setBoolean(BAMInputFormat.KEEP_PAIRED_READS_TOGETHER_PROPERTY,
keepPairedReadsTogether);
if (intervals != null) {
BAMInputFormat.setIntervals(conf, intervals);
}
taskAttemptContext = new TaskAttemptContextImpl(conf, mock(TaskAttemptID.class));
jobContext = new JobContextImpl(conf, taskAttemptContext.getJobID());
}
@Test